Sarah Shelton, Ph.D. | October 20, 2023| UNC-NCSU

Biography:

Dr. Shelton earned her B.S. and M.S. degrees in Environmental Sciences and Engineering at the University of North Carolina before joining the UNC-NCSU Joint Department of Biomedical Engineering for her Ph.D. During her doctoral studies under the guidance of Paul Dayton, she developed ultrasound contrast imaging and analysis methods to identify tortuous vasculature for improved cancer diagnosis. She earned a F99K00 award from the NIH to continue her studies of the vascular tumor microenvironment through a postdoctoral fellowship at Massachusetts Institute of Technology with Roger Kamm, with a co-appointment at Dana-Farber Cancer Institute with David Barbie. She rejoined the UNC-NCSU Joint Department of Biomedical Engineering as an Assistant Professor in 2023, and her current research is in the development of microfluidic, organ-on-chip models of disease to uncover how the tissue microenvironment and cellular interactions shape pathology and treatment response.

Abstract:

Microphysiological systems or “organ-on-chip” devices are three-dimensional models of simplified biological tissues that have expanded the types of hypotheses that can be explored in vitro. My work focuses on vascularized models of the tumor microenvironment to understand how the endothelial barrier interacts with circulating cells and the surrounding stroma in order to investigate factors that drive growth, metastasis, and resistance to therapy in oncology.One illustration of the capabilities of these models is the observation of metastasis-on-chip. By perfusing cancer cells through microfluidic vascular models in the presence of plasma proteins, we have begun to uncover how the clotting cascade influences the extravasation of cancer cells. Additionally, I developed vascularized models of the tumor microenvironment using cells from surgical resections to generate patient-specific devices. In this model, cancer-associated fibroblasts altered several functional indicators of endothelial phenotype including vascular morphology, barrier function, angiogenesis, and immune cell recruitment, likely through cytokine signaling. These types of devices allow us to dissect cellular interactions that drive disease using real-time imaging and other biological techniques.

Clay Wright, Ph.D. | October 6, 2023 | Virginia Tech

Biography:

Dr. Clay Wright’s research aims to understand how signaling networks facilitate both plasticity and robustness in plant form and function and to harness this knowledge to engineer proteins, signaling networks, and biosynthetic pathways for applications in agriculture and biotechnology. He received a B.S. in Chemical and Biomolecular Engineering from North Carolina State University prior to his Ph.D. in Chemical and Biomolecular Engineering from Johns Hopkins University and a Postdoctoral Fellowship in the Departments of Biology and Electrical Engineering at the University of Washington. Clay joined Virginia Tech as Assistant Professor in the department of Biological Systems Engineering. The Wright Plant Synthetic Biology lab integrates approaches from synthetic and computational biology, protein engineering, bioinformatics, molecular evolution, and genetics to quantify signaling dynamics, genetic interactions, and functional relationships in plant signaling.

Abstract:

Humanity is faced with an enormous challenge in the coming decades. The world’s population is rapidly growing, and we need to produce enough food, fuel, medicine and goods to support this growth in an environmentally sustainable and restorative way. Plants will inevitably provide many solutions to the problems we face, but we need to build environmentally sustainable, carbon-negative industries as soon as possible. To accelerate the development of improved agricultural systems that can produce more while using less, we apply synthetic biology approaches to map sequence-function relationships in plant signaling pathways and reengineer them. Towards this end we have developed genetically encoded, ratiometric biosensors for the plant growth hormone auxin in the model yeast Saccharomyces cerevisiae to reengineer how plants respond to this critical hormone. These biosensors have improved quantitative functional studies as well as directed evolution of plant auxin perception machinery. Additionally, these sensors can measure the production of auxin during different growth conditions and phases for S. cerevisiae, and may help us better understand auxin as an interkingdom signaling molecule. To effectively scale our reengineering efforts and expedite expansions to other signaling pathways we have recently developed open-source software for building plasmid and strain libraries using low-cost robotics.

From a Ph.D. to Startup Founder with Dr. Will Cao | 09/15/2023

Friday, September 15, 2023

We would like to give a special thank you to Duke BME Alumna, Dr. Will Cao, for sharing her expertise on the intersection of synthetic biology and generative AI in today’s Frontiers in BioDesign seminar. Your insights as a former Duke student and postdoc in the #YouLab were invaluable!

(Left to right): Dr. Will Cao and Dr. Linghcong You

 

(Left to right) Dr. Daniel Reker, Dr. Will Cao, and Dr. Emma Chory.

 

 

Hoffman’s research article “Developmental Cell” published in the National Library of Medicine

ICYMI: Congratulations to Dr. Brent Hoffman’s Lab on their recent research article in Developmental Cell which was published in the National Library of Medicine.

In this article, they used discrete time Markov chain simulations to develop a technique for probing the ability of mechanical load on one protein to recruit another. Lastly, they used machine learning to determine how this relationship change as the sub-cellular structure adapt to the mechanical loading.